docs: update documentation for pnpm migration
Convert npm run/install/ci -> pnpm equivalents, npx -> pnpm exec, package-lock.json -> pnpm-lock.yaml across CLAUDE.md, groups/global/, docs/SPEC.md, docs/DEBUG_CHECKLIST.md, docs/BRANCH-FORK-MAINTENANCE.md, and docs/docker-sandboxes.md. Kept .npmrc and npm config references where they document real files.
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@@ -57,7 +57,7 @@ The same files conflict every time:
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| File | Resolution |
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|------|------------|
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| `package.json` | Take main's version + keep fork/branch-specific deps |
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| `package-lock.json` | `git checkout main -- package-lock.json && npm install` |
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| `pnpm-lock.yaml` | `git checkout main -- pnpm-lock.yaml && pnpm install` |
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| `.env.example` | Combine: main's entries + fork/branch-specific entries |
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| `repo-tokens/badge.svg` | Take main's version (auto-generated) |
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